Professor Matt Bellgard

Pro Vice Chancellor, Impact & Innovation

Management Board

Professor Matt Bellgard’s career began as a computer scientist with First Class Honours and PhD from the University of Western Australia in machine learning and artificial intelligence applied to classical music. His research journey has led to deep disciplinary, interdisciplinary and transdisciplinary research undertakings with impactful outcomes to the broader community.

Qualifications

PhD Philosophy – The University of Western Australia (1990-1993)
Honours Computer Science First Class - The University of Western Australia (1989-1989)
BSc Double Major in Computer Science and Information Technology (1986-1988)

OVERVIEW

Professor Bellgard holds extensive expertise in artificial intelligence, bioinformatics and digital innovation and has co-authored 165 articles, is co-inventor of 7 full patents, and was project director to design and commission a world’s top-100 supercomputer.

Professor Matt Bellgard graduated with First Class Honours and PhD from the University of Western Australia in artificial intelligence before commencing as a lecturer in Computer Science at Murdoch University. Previously, he was Professor and Foundation Chair in Bioinformatics and the inaugural Director of a Western Australian State Government Centre of Excellence at Murdoch University. This Centre delivered to the needs of industry and government in the areas of health, drug development, agriculture, bio- and food- security, food nutrition, mining, radio astronomy, remote sensing and the environment. He led a project that changed Federal Government biosecurity policy.

Professor Bellgard is project director of global and national digital health solutions. He co-created the Data Strategy Roadmap for the largest Aboriginal and Torres Strait Islander Community Health Service in Queensland and led a project to reform a Queensland Health policy. He Chaired the Asia–Pacific Economic Co-operation Rare Disease (RD) Network which oversaw the development of the APEC RD Action Plan. This Plan brings together governments, industry, academia, clinicians and patient-advocacy groups to support the estimated 200 million individuals living with a RD within the Asia–Pacific region.

Professor Bellgard will work closely with Professor Julia Davison who has so ably undertaken the interim PVC role to lead the evolving institutional Impact and Innovation Strategy, enhancing world-leading impact and preparing the University for a successful REF2028 and beyond.

PUBLICATIONS

Articles

Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria - Hancock, S.J., Álvarez-Fraga, L., De Oliveira, D.M.P., Forde, B., Dale, A., Mujchariyakul, W., Walsh, C.J., Monk, I., Fitzgerald, A., Lum, M., Correa-Ospina, C., Roy Chowdhury, P., Parton, R.G., De Voss, J., Beckett, J., Monty, F., McKinnon, J., Song, X., Stephen, J.R., Everest, M., Bellgard, M.I., Tinning, M., Leeming, M., Hocking, D., Jebeli, L., Wang, N., Ben Zakour, N., Yasar, S.A., Vecchiarelli, S., Russell, T., Zaw, T., Chen, T., Teng, D., Kassir, Z., Lithgow, T., Jenney, A., Cole, J.N., Nizet, V., Sorrell, T.C., Peleg, A.Y., Paterson, D.L., Beatson, S.A., Wu, J., Molloy, M.P., Syme, A.E., Goode, R.J.A., Hunter, A.A., Bowland, G., West, N.P., Wilkins, M.R., Djordjevic, S.P., Davies, M.R., Seemann, T., Howden, B.P., Pascovici, D., Tyagi, S., Schittenhelm, R.B., De Souza, D.P., McConville, M.J., Iredell, J.R., Cordwell, S.J., Strugnell, R.A., Stinear, T.P., Schembri, M.A., Walker, M.J. Nature Communications, 2023, 14(1), 1530.
TEDD: a database of temporal gene expression patterns during multiple developmental periods in human and model organisms - Zhou, Z., Tan, C., Chau, M.H.K., Jiang, X., Ke, Z., Chen, X., Cao, Y., Kwok, Y.K., Bellgard, M., Leung, T.Y., Choy, K.W., Dong, Z. Nucleic acids research, 2023, 51(D1), pp. D1168–D1178
Genome architecture and diverged selection shaping pattern of genomic differentiation in wild barley - Zhang, W., Tan, C., Hu, H., Pan, R., Xiao, Y., Ouyang, K., Zhou, G., Jia, Y., Zhang, X.-Q., Hill, C.B., Wang, P., Chapman, B., Han, Y., Xu, L., Xu, Y., Angessa, T., Luo, H., Westcott, S., Sharma, D., Nevo, E., Barrero, R.A., Bellgard, M.I., He, T., Tian, X., Li, C. Plant Biotechnology Journal, 2023, 21(1), pp. 46–62
An Overview of the Adaptive Behaviour Profile in Young Children with Angelman Syndrome: Insights from the Global Angelman Syndrome Registry - Roche, L., Tones, M., Cross, M., Bellgard, M., Heussler, H. Advances in Neurodevelopmental Disorders, 2022, 6(4), pp. 442–455
Association between early and current gastro-intestinal symptoms and co-morbidities in children and adolescents with Angelman syndrome - Leader, G., Whelan, S., Chonaill, N.N., Coyne, R., Tones, M., Heussler, H., Bellgard, M., Mannion, A. Journal of Intellectual Disability Research, 2022, 66(11), pp. 865–879
Immunomic Investigation of Holocyclotoxins to Produce the First Protective Anti-Venom Vaccine Against the Australian Paralysis Tick, Ixodes holocyclus - Rodriguez-Valle, M., McAlister, S., Moolhuijzen, P.M., Booth, M., Agnew, K., Ellenberger, C., Knowles, A.G., Vanhoff, K., Bellgard, M.I., Tabor, A.E. Frontiers in Immunology, 2021, 12, 744795
A platform in the use of medicines to treat chronic hepatitis C (PLATINUM C): protocol for a prospective treatment registry of real-world outcomes for hepatitis - C Ramsay, J., Marsh, J., Pedrana, A., Andric, N., Norman, R., Cheng, W., Webb, S., Zeps, N., Bellgard, M., Graves, T., Hellard, M., Snelling, T. BMC Infectious Diseases, 2020, 20(1), 802
Design, development and deployment of a web-based patient registry for rare genetic lipid disorders - Napier, K.R., Hooper, A.J., Ng, D.M., Render, L., Bell, D.A., Pang, J., Watts, G.F., Bellgard, M.I., Burnett, J.R. Pathology, 2020, 52(4), pp. 447–452
ERDMAS: An exemplar-driven institutional research data management and analysis strategy - Bellgard, M.I. International Journal of Information Management, 2020, 50, pp. 337–340
BarleyVarDB: A database of barley genomic variation - Tan, C., Chapman, B., Wang, P., Zhang, Q., Zhou, G., Zhang, X.-Q., Barrero, R.A., Bellgard, M.I., Li, C. Database, 2020, 2020, baaa091
Characterization of genome-wide variations induced by gamma-ray radiation in barley using RNA-Seq - Tan, C., Zhang, X.-Q., Wang, Y., Wu, D., Bellgard, M.I., Xu, Y., Shu, X., Zhou, G., Li, C. BMC Genomics, 2019, 20(1), 783
RD-RAP: Beyond rare disease patient registries, devising a comprehensive data and analytic framework - Bellgard, M.I. , Snelling, T. , McGree, J.M. Orphanet Journal of Rare Diseases, 2019, 14(1), 176
Trial refresh: A case for an adaptive platform trial for pulmonary exacerbations of cystic fibrosis - Schultz, A., Marsh, J.A., Saville, B.R., Norman, R., Middleton, P.G., Greville, H.W., Bellgard, M.I., Berry, S.M., Snelling, T. , Frontiers in Pharmacology, 2019, 10(MAR), 301
Differentially expressed genes in response to amitraz treatment suggests a proposed model of resistance to amitraz in R. decoloratus ticks - Baron, S., Barrero, R.A., Black, M., Bellgard, M.I., van Dalen, E., Maritz-Olivier, C., International Journal for Parasitology: Drugs and Drug Resistance, 2018, 8(3), pp. 361–371
Research protocol: The initiation, design and establishment of the Global Angelman Syndrome Registry - Tones, M., Cross, M., Simons, C., Napier, K.R., Hunter, A., Bellgard, M.I., Heussler, H. Journal of Intellectual Disability Research, 2018, 62(5), pp. 431–443
De novo assembly of honey bee RNA viral genomes by tapping into the innate insect antiviral response pathway Fung, E., Hill, K., Hogendoorn, K., (...), Bellgard, M.I., Barrero, R.A. 2018 Journal of Invertebrate Pathology 152, pp. 38-47
Design of a framework for the deployment of collaborative independent rare disease-centric registries: Gaucher disease registry model Bellgard, M.I., Napier, K.R., Bittles, A.H., (...), Hunter, A.A., Goldblatt, J. 2018 Blood Cells, Molecules, and Diseases 68, pp. 232-238
Transcriptome and toxin family analysis of the paralysis tick, Ixodes holocyclus, Rodriguez-Valle, M., Moolhuijzen, P., Barrero, R.A., (...), Bellgard, M.I., Tabor, A.E. 2018 International Journal for Parasitology 48(1), pp. 71-82
Plant Proteogenomics: Improvements to the Grapevine Genome Annotation, Chapman, B., Bellgard, M. 2017 Proteomics 17(21),1700197
Comprehending the Health Informatics Spectrum: Grappling with System Entropy and Advancing Quality Clinical Research, Bellgard, M.I., Chartres, N., Watts, G.F., (...), Hunter, A., Snelling, T. 2017 Frontiers in Public Health 5,224
Rare disease registries: a call to action, Lacaze, P., Millis, N., Fookes, M., (...), McNeil, J., Bittles, A.H. 2017 Internal Medicine Journal 47(9), pp. 1075-1079
A web-based, patient driven registry for Angelman syndrome: The global Angelman syndrome registry, Napier, K.R., Tones, M., Simons, C., (...), Cross, M., Bellgard, M.I. 2017 Orphanet Journal of Rare Diseases 12(1),134
Gene-enriched draft genome of the cattle tick Rhipicephalus microplus: assembly by the hybrid Pacific Biosciences/Illumina approach enabled analysis of the highly repetitive genome, Barrero, R.A., Guerrero, F.D., Black, M., (...), Hunter, A., Bellgard, M.I. 2017 International Journal for Parasitology 47(9), pp. 569-583
A Web-Based Registry for Familial Hypercholesterolaemia, Napier, K.R., Pang, J., Lamont, L., (...), Watts, G.F., Bellgard, M.I. 2017 Heart Lung and Circulation 26(6), pp. 635-639
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L., Beier, S., Himmelbach, A., Colmsee, C., (...), Stein, N., Mascher, M. 2017 Scientific Data 4,170044
A chromosome conformation capture ordered sequence of the barley genome, Mascher, M., Gundlach, H., Himmelbach, A., (...), Waugh, R., Stein, N. 2017 Nature 544(7651), pp. 427-433
MASTR-MS: a web-based collaborative laboratory information management system (LIMS) for metabolomics, Hunter, A., Dayalan, S., De Souza, D., (...), McConville, M., Bellgard, M. 2017 Metabolomics 13(2),14
An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids, Barrero, R.A., Napier, K.R., Cunnington, J., (...), Whattam, M., Bellgard, M.I. 2017 BMC Bioinformatics 18(1),26
Clinical Outcomes in Duchenne Muscular Dystrophy: A Study of 5345 Patients from the TREAT-NMD DMD Global Database Open Access Koeks, Z., Bladen, C.L., Salgado, D., (...), Verschuuren, J.J., Lochmüller, H. 2017 Journal of Neuromuscular Diseases 4(4), pp. 293-306
Design of the familial hypercholesterolaemia australasia network registry: Creating opportunities for greater international collaboration Open Access Bellgard, M.I., Walker, C.E., Napier, K.R., (...), Dawkins, H.J.S., Watts, G.F. 2017 Journal of Atherosclerosis and Thrombosis 24(10), pp. 1075-1084
Prediction of G protein-coupled receptor encoding sequences from the synganglion transcriptome of the cattle tick, Rhipicephalus microplus Guerrero, F.D., Kellogg, A., Ogrey, A.N., (...), Dowd, S.E., Leung, M.-Y. 2016 Ticks and Tick-borne Diseases 7(5), pp. 670-67
Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM), Coghlan, M.L., Maker, G., Crighton, E., (...), Musgrave, I.F., Bunce, M. 2015 Scientific Reports 5,17475
The mitochondrial genome of a Texas outbreak strain of the cattle tick, Rhipicephalus (Boophilus) microplus, derived from whole genome sequencing Pacific Biosciences and Illumina reads, McCooke, J.K., Guerrero, F.D., Barrero, R.A., (...), Miller, R.J., Bellgard, M.I. 2015 Gene 571(1), pp. 135-141
Acetylcholinesterase 1 in populations of organophosphate-resistant North American strains of the cattle tick, Rhipicephalus microplus (Acari: Ixodidae) Bendele, K.G., Guerrero, F.D., Miller, R.J., (...), Hill, C.A., Bellgard, M.I. 2015 Parasitology Research 114(8), pp. 3027-3040
Pseudoexon activation increases phenotype severity in a becker muscular dystrophy patient, Greer, K., Mizzi, K., Rice, E., (...), Wilton, S.D., Fletcher, S. 2015 Molecular Genetics and Genomic Medicine 3(4), pp. 320-326
Differential gene expression analysis in early and late erythroid progenitor cells in β-thalassaemia, Forster, L., Mccooke, J., Bellgard, M., (...), Finlayson, J., Ghassemifar, R. 2015 British Journal of Haematology 170(2), pp. 257-267
Analysis of multiple Brachyspira hyodysenteriae genomes confirms that the species is relatively conserved but has potentially important strain variation, Black, M., Moolhuijzen, P., Barrero, R., (...), Barth, S., Bellgard, M. 2015 PLoS ONE 10(6)
The TREAT-NMD DMD global database: Analysis of more than 7,000 duchenne muscular dystrophy mutations Open Access Bladen, C.L., Salgado, D., Monges, S., (...), Béroud, C., Lochmüller, H. 2015 Human Mutation 36(4), pp. 395
Rare Disease Research Roadmap: Navigating the bioinformatics and translational challenges for improved patient health outcomes Open Access Bellgard, M.I., Sleeman, M.W., Guerrero, F.D., (...), Mason, C.E., Weeramanthri, T. 2014 Health Policy and Technology 3(4), pp. 325-335
High-throughput parallel proteogenomics: A bacterial case study Chapman, B., Bellgard, M. 2014 Proteomics 14(23-24), pp. 2780-2789
Second generation registry framework, Bellgard, M.I., Render, L., Radochonski, M., Hunter, A. 2014 Source Code for Biology and Medicine 9(1),14
Genome sequencing and analysis of the paclitaxel-producing endophytic fungus Penicillium aurantiogriseum NRRL 62431 Open Access Yang, Y., Zhao, H., Barrero, R.A., (...), Lai, J., Hoffman, A. 2014 BMC Genomics 15(1),69
Genome interplay in the grain transcriptome of hexaploid bread wheat, Pfeifer, M., Kugler, K.G., Sandve, S.R., (...), Keller, B., Praud, S. 2014 Science 345(6194)
Draft genome sequences of Campylobacter fetus subsp. venerealis bv. venerealis strain B6 and bv. intermedius strain 642-21 Barrero, R.A., Moolhuijzen, P., Indjein, L., (...), Bellgard, M.I., Lew-Tabor, A.E. 2014 Genome Announcements 2(5),e00943-14
Ancient hybridizations among the ancestral genomes of bread wheat, Marcussen, T., Sandve, S.R., Heier, L., (...), Keller, B., Praud, S. 2014 Science 345(6194),1250092
A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome Lukaszewski, A.J., Alberti, A., Sharpe, A., (...), Ogihara, Y., Dubská, Z. 2014 Science 345(6194),1251788
Metabarcoding avian diets at airports: Implications for bird strike hazard management planning, Coghlan, M.L., White, N.E., Murray, D.C., (...), Haile, J., Bunce, M. 2013 Investigative Genetics 4(1),27
Scrapheap Challenge: A novel bulk-bone metabarcoding method to investigate ancient DNA in faunal assemblages, Murray, D.C., Haile, J., Dortch, J., (...), Prideaux, G.J., Bunce, M. 2013 Scientific Reports 3,3371
Classification of fish samples via an integrated proteomics and bioinformatics approach, Bellgard, M., Taplin, R., Chapman, B., (...), Hunter, A., Lipscombe, R. 2013 Proteomics 13(21), pp. 3124-3130
Dispelling myths about rare disease registry system development, Bellgard, M., Beroud, C., Parkinson, K., (...), Dawkins, H., Hunter, A. 2013 Source Code for Biology and Medicine 8,21
Objective monitoring of mTOR inhibitor therapy by three-dimensional facial analysis, Baynam, G.S., Walters, M., Dawkins, H., (...), Halbert, A.R., Claes, P. 2013 Twin Research and Human Genetics 16(4), pp. 840-844
Rhipicephalus microplus lipocalins (LRMs): Genomic identification and analysis of the bovine immune response using in silico predicted B and T cell epitopes, Rodriguez-Valle, M., Moolhuijzen, P., Piper, E.K., (...), Bellgard, M., Lew-Tabor, A. 2013 International Journal for Parasitology 43(9), pp. 739-752
Genome sequences of six wheat-infecting Fusarium species isolates Moolhuijzen, P.M., Manners, J.M., Wilcox, S.A., Bellgard, M.I., Gardiner, D.M. 2013 Genome Announcements 1(5),e00670-13
High-throughput sequencing of ancient plant and mammal DNA preserved in herbivore middens Murray, D.C., Pearson, S.G., Fullagar, R., (...), Haile, J., Bunce, M. 2012 Quaternary Science Reviews 58, pp. 135-145
The New Zealand neuromuscular disease registry, Rodrigues, M., Hammond-Tooke, G., Kidd, A., (...), Bellgard, M., Roxburgh, R. 2012 Journal of Clinical Neuroscience 19(12), pp. 1749-1750
Comparative genomics of Brachyspira pilosicoli strains: Genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity, Mappley, L.J., Black, M.L., AbuOun, M., (...), La Ragione, R.M., Hampson, D.J. 2012 BMC Genomics 13(1),454
A novel mutation causing nephronophthisis in the Lewis polycystic kidney rat localises to a conserved RCC1 domain in Nek8, McCooke, J.K., Appels, R., Barrero, R.A., (...), Morahan, G., Phillips, J.K. 2012 BMC Genomics 13(1),393
Bread matters: A national initiative to profile the genetic diversity of Australian wheat, Edwards, D., Wilcox, S., Barrero, R.A., (...), Appels, R., Fitzgerald, A. 2012 Plant Biotechnology Journal 10(6), pp. 703-708
Genome-level identification of cell wall invertase genes in wheat for the study of drought tolerance, Webster, H., Keeble, G., Dell, B., (...), Choulet, F., Appels, R. 2012 Functional Plant Biology 39(7), pp. 569-579
Deep sequencing of plant and animal DNA contained within traditional Chinese medicines reveals legality issues and health safety concerns, Coghlan, M.L., Haile, J., Houston, J., (...), Bellgard, M.I., Bunce, M. 2012 PLoS Genetics 8(4),e1002657
A bioinformatics framework for plant pathologists to deliver global food security outcomes, Bellgard, M.I., Bellgard, S.E., 2012, Australasian Plant Pathology
The genetics of symbiotic nitrogen fixation: Comparative genomics of 14 rhizobia strains by resolution of protein clusters, Black, M., Moolhuijzen, P., Chapman, B., Barrero, R., Howieson, J., Hungria, M., Bellgard, M., 2012, Genes.
Yabi: An online research environment for grid, high performance and cloud computing, Hunter, A.A., Macgregor, A.B., Szabo, T.O., Wellington, C.A., Bellgard, M.I.,2012,Source Code for Biology and Medicine.
CattleTickBase: An integrated Internet-based bioinformatics resource for Rhipicephalus (Boophilus) microplus,Bellgard, M.I., Moolhuijzen, P.M., Guerrero, F.D., Schibeci, D., Rodriguez-Valle, M., Peterson, D.G., Dowd, S.E., Barrero, R., Hunter, A., Miller, R.J., Lew-Tabor, A.E., 2012 International Journal for Parasitology
De novo assembly of Euphorbia fischeriana root transcriptome identifies prostratin pathway related genes, Barrero, R.A., Chapman, B., Yang, Y., Moolhuijzen, P., Keeble-Gagnère, G., Zhang, N., Tang, Q., Bellgard, M.I., Qiu, D., 2011 , BMC Genomics
Evidence that the 36kb plasmid of Brachyspira hyodysenteriae contributes to virulence, La, T., Phillips, N.D., Wanchanthuek, P., Bellgard, M.I., O'Hara, A.J., Hampson, D.J., 2011, Veterinary Microbiology
DNA-based faecal dietary analysis: A comparison of qPCR and high throughput sequencing approaches, Murray, D.C., Bunce, M., Cannell, B.L., Oliver, R., Houston, J., White, N.E., Barrero, R.A., Bellgard, M.I., Haile, J., 2011 , PLoS ONE
ThalInd, a β-thalassemia and hemoglobinopathies database for India: Defining a model country-specific and disease-centric bioinformatics resource, Sinha, S., Black, M.L., Agarwal, S., Das, R., Bittles, A.H., Bellgard, M. , 2011, Human Mutation
Gene expression evidence for off-target effects caused by RNA interference-mediated gene silencing of Ubiquitin-63E in the cattle tick Rhipicephalus microplus, Lew-Tabor, A.E., Kurscheid, S., Barrero, R., Gondro, C., Moolhuijzen, P.M., Rodriguez Valle, M., Morgan, J.A.T., Covacin, C., Bellgard, M.I. 2011 International Journal for Parasitology
The complexity of Rhipicephalus (Boophilus) microplus genome characterised through detailed analysis of two BAC clones, Moolhuijzen, P.M., Lew-Tabor, A.E., Morgan, J.A.T., Valle, M., Peterson, D.G., Dowd, S.E., Guerrero, F.D., Bellgard, M.I., Appels, R. 2011, BMC Research Notes
Evolutionary conserved microRNAs are ubiquitously expressed compared to tick-specific miRNAs in the cattle tick Rhipicephalus (Boophilus) microplus, Barrero, R.A., Keeble-Gagnère, G., Zhang, B., Moolhuijzen, P., Ikeo, K., Tateno, Y., Gojobori, T., Guerrero, F.D., Lew-Tabor, A., Bellgard, M. 2011 BMC Genomics
A descriptive profile of β-thalassaemia mutations in India, Pakistan and Sri Lanka, Black, M.L., Sinha, S., Agarwal, S., Colah, R., Das, R., Bellgard, M., Bittles, A.H. 2010 Journal of Community Genetics
The complete genome sequence of the pathogenic intestinal spirochete Brachyspira pilosicoli and comparison with other Brachyspira genomes, Wanchanthuek, P., Bellgard, M.I., La, T., Ryan, K., Moolhuijzen, P., Chapman, B., Black, M., Schibeci, D., Hunter, A., Barrero, R., Phillips, N.D., Hampson, D.J. 2010 PLoS ONE
Comparative microarray analysis of Rhipicephalus (Boophilus) microplus expression profiles of larvae pre-attachment and feeding adult female stages on Bos indicus and Bos taurus cattle, Rodriguez-Valle, M., Lew-Tabor, A., Gondro, C., Moolhuijzen, P., Vance, M., Guerrero, F.D., Bellgard, M., Jorgensen, W., 2010, BMC Genomics
Reassociation kinetics-based approach for partial genome sequencing of the cattle tick, Rhipicephalus (Boophilus) microplus, Guerrero, F.D., Moolhuijzen, P., Peterson, D.G., Bidwell, S., Caler, E., Bellgard, M., Nene, V.M., Djikeng, A. , 2010 BMC Genomics
A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: Diverse gene function and genomic structure maintained in a tightly linked block, Breen, J., Wicker, T., Kong, X., Zhang, J., Ma, W., Paux, E., Feuillet, C., Appels, R., Bellgard, M., 2010 BMC Plant Biology.
Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain, Breen, J., Li, D., Dunn, D.S., Békés, F., Kong, X., Zhang, J., Jia, J., Wicker, T., Mago, R., Ma, W., Bellgard, M., Appels, R. 2010 BMC Plant Biology
Aligning a new reference genetic map of lupinus angustifolius with the genome sequence of the model legume, lotus japonicus Nelson, M.N., Moolhuijzen, P.M., Boersma, J.G., Chudy, M., Lesniewska, K., Bellgard, M., Oliver, R.P., Świcicki, W., Wolko, B., Cowling, W.A., Ellwood, S.R. 2010 DNA Research
Suppressive subtractive hybridization analysis of Rhipicephalus (Boophilus) microplus larval and adult transcript expression during attachment and feeding, Lew-Tabor, A.E., Moolhuijzen, P.M., Vance, M.E., Kurscheid, S., Valle, M.R., Jarrett, S., Minchin, C.M., Jackson, L.A., Jonsson, N.N., Bellgard, M.I., Guerrero, F.D. 2010 Veterinary Parasitology
Profiling β-thalassaemia mutations in India at state and regional levels: Implications for genetic education, screening and counselling programmes, Sinha, S., Black, M.L., Agarwal, S., Colah, R., Das, R., Ryan, K., Bellgard, M., Bittles, A.H. 2009 HUGO Journal
Multilocus sequence typing as a tool for studying the molecular epidemiology and population structure of Brachyspira hyodysenteriae, La, T., Phillips, N.D., Harland, B.L., Wanchanthuek, P., Bellgard, M.I., Hampson, D.J. 2009 Veterinary Microbiology.
Protein data integration problem, Sidhu, A.S., Bellgard, M., 2009, Studies in Computational Intelligence
Current trends in biomedical data and applications, Sidhu, A.S., Bellgard, M., Dillon, T.S.,2009 Studies in Computational Intelligence
Genomic analysis of Campylobacter fetus subspecies: Identification of candidate virulence determinants and diagnostic assay targets, Moolhuijzen, P.M., Lew-Tabor, A.E., Wlodek, B.M., Agüero, F.G., Comerci, D.J., Ugalde, R.A., Sanchez, D.O., Appels, R., Bellgard, M., 2009 BMC Microbiology
A reverse vaccinology approach to swine dysentery vaccine development, Song, Y., La, T., Phillips, N.D., Bellgard, M.I., Hampson, D.J.2009 Veterinary Microbiology
Evidence of a tick RNAi pathway by comparative genomics and reverse genetics screen of targets with known loss-of-function phenotypes in Drosophila, Kurscheid, S., Lew-Tabor, A.E., Rodriguez Valle, M., Bruyeres, A.G., Doogan, V.J., Munderloh, U.G., Guerrero, F.D., Barrero, R.A., Bellgard, M.I. 2009 BMC Molecular Biology
GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley, Jia, Q.J., Zhang, J.J., Westcott, S., Zhang, X.-Q., Bellgard, M., Lance, R., Li, C.D. 2009 Functional and Integrative Genomics
Genome sequence of the pathogenic intestinal spirochete Brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine, Bellgard, M.I., Wanchanthuek, P., La, T., Ryan, K., Moolhuijzen, P., Albertyn, Z., Shaban, B., Motro, Y., Dunn, D.S., Schibeci, D., Hunter, A., Barrero, R., Phillips, N.D., Hampson, D.J.2009 PLoS ONE
Identification of genes associated with prophage-like gene transfer agents in the pathogenic intestinal spirochaetes Brachyspira hyodysenteriae, Brachyspira pilosicoli and Brachyspira intermedia, Motro, Y., La, T., Bellgard, M.I., Dunn, D.S., Phillips, N.D., Hampson, D.J. 2009 Veterinary Microbiology
BAC-derived markers for assaying the stem rust resistance gene, Sr2, in wheat breeding programs, McNeil, M.D., Kota, R., Paux, E., Dunn, D., McLean, R., Feuillet, C., Li, D., Kong, X., Lagudah, E., Zhang, J.C., Jia, J.Z., Spielmeyer, W., Bellgard, M., Appels, R., 2008 Molecular Breeding
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts, Yamasaki, C., Murakami, K., Fujii, Y., Sato, Y., Harada, E., Takeda, J.-I., Taniya, T., Sakate, R., Kikugawa, S., Shimada, M., Tanino, M., Koyanagi, K.O., Barrero, R.A., Gough, C., Chun, H.-W., Habara, T., Hanaoka, H., Hayakawa, Y., Hilton, P.B., Kaneko, Y., Kanno, M., Kawahara, Y., Kawamura, T., Matsuya, A., Nagata, N., Nishikata, K., Noda, A.O., Nurimoto, S., Saichi, N., Sakai, H., Sanbonmatsu, R., Shiba, R., Suzuki, M., Takabayashi, K., Takahashi, A., Tamura, T., Tanaka, M., Tanaka, S., Todokoro, F., Yamaguchi, K., Yamamoto, N., Okido, T., Mashima, J., Hashizume, A., Jin, L., Lee, K.-B., Lin, Y.-C., Nozaki, A., Sakai, K., Tada, M., Miyazaki, S., Makino, T., Ohyanagi, H., Osato, N., Tanaka, N., Suzuki, Y., Ikeo, K., Saitou, N., Sugawara, H., O'Donovan, C., Kulikova, T., Whitfield, E., Halligan, B., Shimoyama, M., Twigger, S., Yura, K., Kimura, K., Yasuda, T., Nishikawa, T., Akiyama, Y., Motono, C., Mukai, Y., Nagasaki, H., Suwa, M., Horton, P., Kikuno, R., Ohara, O., Lancet, D., Eveno, E., Graudens, E., Imbeaud, S., Debily, M.A., Hayashizaki, Y., Amid, C., Han, M., Osanger, A., Endo, T., Thomas, M.A., Hirakawa, M., Makalowski, W., Nakao, M., Kim, N.-S., Yoo, H.-S., De Souza, S.J., De Fatima Bonaldo, M., Niimura, Y., Kuryshev, V., Schupp, I., Wiemann, S., Bellgard, M., Shionyu, M., Jia, L., Thierry-Mieg, D., Thierry-Mieg, J., Wagner, L., Zhang, Q., Go, M., Minoshima, S., Ohtsubo, M., Hanada, K., Tonellato, P., Isogai, T., Zhang, J., Lenhard, B., Kim, S., Chen, Z., Hinz, U., Estreicher, A., Nakai, K., Makalowska, I., Hide, W., Tiffin, N., Wilming, L., Chakraborty, R., Soares, M.B., Chiusano, M.L., Suzuki, Y., Auffray, C., Yamaguchi-Kabata, Y., Itoh, T., Hishiki, T., Fukuchi, S., Nishikawa, K., Sugano, S., Nomura, N., Tateno, Y., Imanishi, T., Gojobori, T., 2008 Nucleic Acids Research
A promoter with bidirectional activity is located between TLX1/HOX11 and a divergently transcribed novel human gene, Greene, W.K., Sontani, Y., Sharp, M.A., Dunn, D.S., Kees, U.R., Bellgard, M.I., 2007 Gene
The first gene-based map of Lupinus angustifolius L.-location of domestication genes and conserved synteny with Medicago truncatula, Nelson, M.N., Phan, H.T.T., Ellwood, S.R., Moolhuijzen, P.M., Hane, J., Williams, A., O'Lone, C.E., Fosu-Nyarko, J., Scobie, M., Cakir, M., Jones, M.G.K., Bellgard, M., Ksia̧zkiewicz, M., Wolko, B., Barker, S.J., Oliver, R.P., Cowling, W.A. 2006 Theoretical and Applied Genetics
LegumeDB1 bioinformatics resource: Comparative genomic analysis and novel cross-genera marker identification in lupin and pasture legume species, Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K., Appels, R., Bellgard, M., 2006 Genome
Grendel: A bioinformatics web service-based architecture for accessing HPC resources, Hunter, A., Schibeci, D., Hiew, H.L., Bellgard, M., 2005 Conferences in Research and Practice in Information Technology Series
Gene expression profiling of Japanese psoriatic skin reveals an increased activity in molecular stress and immune response signals, Kulski, J.K., Kenworthy, W., Bellgard, M., Taplin, R., Okamoto, K., Oka, A., Mabuchi, T., Ozawa, A., Tamiya, G., Inoko, H., 2005 Journal of Molecular Medicine
Polymorphic Alu insertions and their associations with MHC class I alleles and haplotypes in the Northeastern Thais, Dunn, D.S., Romphruk, A.V., Leelayuwat, C., Bellgard, M., Kulski, J.K., 2005 Annals of Human Genetics
Statistical evaluation and comparison of a pairwise alignment algorithm that a priori assigns the number of gaps rather than employing gap penalties, Nozaki, Y., Bellgard, M.,2005 Bioinformatics
Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison, Li, C., Ni, P., Francki, M., Hunter, A., Zhang, Y., Schibeci, D., Li, H., Tarr, A., Wang, J., Cakir, M., Yu, J., Bellgard, M., Lance, R., Appels, R., 2004 Functional and Integrative Genomics
Comparative organization of wheat homoeologous group 3S and 7L using wheat-rice synteny and identification of potential markers for genes controlling xanthophyll content in wheat, Francki, M., Carter, M., Ryan, K., Hunter, A., Bellgard, M., Appels, R., 2004 Functional and Integrative Genomics
Integrative annotation of 21,037 human genes validated by full-length cDNA clones, Imanishi, T., Itoh, T., Suzuki, Y., O'Donovan, C., Fukuchi, S., Koyanagi, K.O., Barrero, R.A., Tamura, T., Yamaguchi-Kabata, Y., Tanino, M., Yura, K., Miyazaki, S., Ikeo, K., Homma, K., Kasprzyk, A., Nishikawa, T., Hirakawa, M., Thierry-Mieg, J., Thierry-Mieg, D., Ashurst, J., Jia, L., Nakao, M., Thomas, M.A., Mulder, N., Karavidopoulou, Y., Jin, L., Kim, S., Yasuda, T., Lenhard, B., Eveno, E., Suzuki, Y., Yamasaki, C., Takeda, J.-I., Gough, C., Hilton, P., Fujii, Y., Sakai, H., Tanaka, S., Amid, C., Bellgard, M., de Fatima Bonaldo, M., Bono, H., Bromberg, S.K., Brookes, A.J., Bruford, E., Carninci, P., Chelala, C., Couillault, C., de Souza, S.J., Debily, M.-A., Devignes, M.-D., Dubchak, I., Endo, T., Estreicher, A., Eyras, E., Fukami-Kobayashi, K., Gopinath, G.R., Graudens, E., Hahn, Y., Han, M., Han, Z.-G., Hanada, K., Hanaoka, H., Harada, E., Hashimoto, K., Hinz, U., Hirai, M., Hishiki, T., Hopkinson, I., Imbeaud, S., Inoko, H., Kanapin, A., Kaneko, Y., Kasukawa, T., Kelso, J., Kersey, P., Kikuno, R., Kimura, K., Korn, B., Kuryshev, V., Makalowska, I., Makino, T., Mano, S., Mariage-Samson, R., Mashima, J., Matsuda, H., Mewes, H.-W., Minoshima, S., Nagai, K., Nagasaki, H., Nagata, N., Nigam, R., Ogasawara, O., Ohara, O., Ohtsubo, M., Okada, N., Okido, T., Oota, S., Ota, M., Ota, T., Otsuki, T., Piatier-Tonneau, D., Poustka, A., Ren, S.-X., Saitou, N., Sakai, K., Sakamoto, S., Sakate, R., Schupp, I., Servant, F., Sherry, S., Shiba, R., Shimizu, N., Shimoyama, M., Simpson, A.J., Soares, B., Steward, C., Suwa, M., Suzuki, M., Takahashi, A., Tamiya, G., Tanaka, H., Taylor, T., Terwilliger, J.D., Unneberg, P., Veeramachaneni, V., Watanabe, S., Wilming, L., Yasuda, N., Hyang-Yoo, S., Stodolsky, M., Makalowski, W., Go, M., Nakai, K., Takagi, T., Kanehisa, M., Sakaki, Y., Quackenbush, J., Okazaki, Y., Hayashizaki, Y., Hide, W., Chakraborty, R., Nishikawa, K., Sugawara, H., Tateno, Y., Chen, Z., Oishi, M., Tonellato, P., Apweiler, R., Okubo, K., Wagner, L., Wiemann, S., Strausberg, R.L., Isogai, T., Auffray, C., Nomura, N., Gojobori, T., Sugano, S., 2004 PLoS Biology
MASV - Multiple (BLAST) Annotation System Viewer, Carter, K., Bellgard, M., 2003 Bioinformatics
Genomic and phylogenetic analysis of the S100A7 (psoriasin) gene duplications within the region of the S100 gene cluster on human chromosome 1q21, Kulski, J.K., Lim, C.P., Dunn, D.S., Bellgard, M., 2003 Journal of Molecular Evolution
Gap mapping: a paradigm for aligning two sequences, Bellgard, M., Gamble, T., Reynolds, M., Hunter, A., Trifonov, E., Taplin, R.2003 Applied bioinformatics
FBSA: feature-based sequence alignment technique for very large sequences, Bellgard, M., Kenworthy, W. 2003 Applied bioinformatics
Microarray analysis using bioinformatics analysis audit trails (BAATs) Bellgard, M., Hunter, A., Kenworthy, W. 2003 Comptes Rendus - Biologies
Applying artificial neural networks to the classification of wheat varieties processed via MALDI-TOF mass spectrometry, Schibeci, D., Potter, R., Wathen-Dunn, K., Jones, M., Bellgard, M. 2001 Advances in Neural Networks and Applications
Early detection of G + C differences in bacterial species inferred from the comparative analysis of the two completely sequenced Helicobacter pylori strains, Bellgard, M., Schibeci, D., Trifonov, E., Gojobori, T. 2001 Journal of Molecular Evolution
Intragenic variation of synonymous substitution rates is caused by nonrandom mutations at methylated CpG, Tsunoyama, K., Bellgard, M.I., Gojobori, T., 2001 Journal of Molecular Evolution
Bioinformatics issues for automating the annotation of genomic sequences, Carter, K., Oka, A., Tamiya, G., Bellgard, M.I., 2001 Genome informatics. International Conference on Genome Informatics
Structure and polymorphism of two stress-activated protein kinase genes centromeric of the MHC: SAPK2a and SAPK4 , Herbison, C.E., Sayer, D.C., Bellgard, M., Allcock, R.J.N., Christiansen, F.T., Price, P., 1999 Mitochondrial DNA
Significant differences between the G+C content of synonymous codons in orthologous genes and the genomic G+C content , Bellgard, M.I., Gojobori, T., 1999 Gene
Identification of a ribonuclease H gene in both Mycoplasma genitalium and Mycoplasma pneumoniae by a new method for exhaustive identification of ORFs in the complete genome sequences, Bellgard, M.I., Gojobori, T., 1999 FEBS Letters
MCD haplotype analysis by Artificial Neural Networks, Bellgard, M.I., Tay, G.K., Hiew, H.L., Witt, C.S., Ketheesan, N., Christiansen, F.T., Dawkins, R.L., 1998 Human Immunology
The evolution of MHC diversity by segmental duplication and transposition of retroelements, Kulski, J.K., Gaudieri, S., Bellgard, M., Balmer, L., Giles, K., Inoko, H., Dawkins, R.L., 1997 Journal of Molecular Evolution
Harmonizing Music the Boltzmann Way, Bellgard, M.I., Tsang, C.P., 1994 Connection Science

Reviews

MiNDAUS partnership: a roadmap for the cure and management of motor Neurone disease, Vucic, S., Wray, N., Henders, A., Henderson, R.D., Talman, P., Mathers, S., Bellgard, M., Aoun, S., Birks, C., Thomas, G., Hansen, C., Thomas, G., Hogden, A., Needham, M., Schultz, D., Soulis, T., Sheean, B., Milne, J., Rowe, D., Zoing, M., Kiernan, M.C. Amyotrophic Lateral Sclerosis and Frontotemporal Degeneration, 2022, 23(5-6), pp. 321–328
The role of patient registries for rare genetic lipid disorders Ng, D.M., Hooper, A.J., Bellgard, M.I., Burnett, J.R. 2018 Current Opinion in Lipidology 29(2), pp. 156-162
Translational development of splice-modifying antisense oligomers Fletcher, S., Bellgard, M., Price, L., Akkari, A., Wilton, S. 2017 Expert Opinion on Biological Therapy 17(1), pp. 15-30
How to Identify Pathogenic Mutations among All Those Variations: Variant Annotation and Filtration in the Genome Sequencing Era Open Access Salgado, D., Bellgard, M.I., Desvignes, J.-P., Béroud, C. 2016 Human Mutation 37(12), pp. 1272-1282
Phenotyping: Targeting genotype's rich cousin for diagnosis Baynam, G., Walters, M., Claes, P., (...), Gillett, D., Goldblatt, J. 2015 Journal of Paediatrics and Child Health 51(4), pp. 381-386
Plant proteogenomics: From protein extraction to improved gene predictions Chapman, B., Castellana, N., Apffel, A., (...), Haynes, P.A., Van Sluyter, S.C. 2013 Methods in Molecular Biology 1002, pp. 267-294
Advances in biotechnology and informatics to link variation in the genome to phenotypes in plants and animals. Appels, R., Barrero, R., Bellgard, M. 2013 Functional & integrative genomics 13(1), pp. 1-9
Advances in biotechnology and linking outputs to variation in complex traits: Plant and Animal Genome meeting January 2012 Appels, R., Barrero, R., Bellgard, M. 2012 Functional and Integrative Genomics 12(1), pp. 1-9
Diverse approaches to achieving grain yield in wheat, Barrero, R.A., Bellgard, M., Zhang, X. 2011 Functional and Integrative Genomics 11(1), pp. 37-48
Genome studies at the PAG 2011 conference Appels, R., Adelson, D.L., Moolhuijzen, P., (...), Barrero, R., Bellgard, M. 2011 Functional and Integrative Genomics 11(1), pp. 1-11
Germin-like proteins (GLPs) in cereal genomes: Gene clustering and dynamic roles in plant defence, Breen, J., Bellgard, M. 2010 Functional and Integrative Genomics 10(4), pp. 463-476
Advances in genome studies: The PAG 2010 conference, Appels, R., Barrerro, R., Keeble, G., Bellgard, M. 2010 Functional and Integrative Genomics 10(1), pp. 1-9
The transcript repeat element: The human Alu sequence as a component of gene networks influencing cancer Moolhuijzen, P., Kulski, J.K., Dunn, D.S., (...), Gojobori, T., Bellgard, M. 2010 Functional and Integrative Genomics 10(3), pp. 307-319
Ten years of bacterial genome sequencing: Comparative-genomics-based discoveries, Binnewies, T.T., Motro, Y., Hallin, P.F., (...), Wassenaar, T.M., Ussery, D.W. 2006 Functional and Integrative Genomics 6(3), pp. 165-185
The bioinformatics challenges in comparative analysis of cereal genomes - An overview, Bellgard, M., Ye, J., Gojobori, T., Appels, R. 2004 Functional and Integrative Genomics 4(1), pp. 1-11
Inferring the direction of evolutionary changes of genomic base composition, Bellgard, M.I., Gojobori, T. 1999 Trends in Genetics 15(7), pp. 254-256

Book Chapters

Metabolomics - the combination of analytical biochemistry, biology, and informatics - Roessner, U. , Nahid, A. , Chapman, B. , Hunter, A. , Bellgard, M. Comprehensive Biotechnology, 2019, pp. 435–447
Wheat grain proteomics for the food industry, Juhász, A., Moolhuijzen, P., Bellgard, M., Appels, R., Békés, F. , 2013 Proteomics in Foods: Principles and Applications
Metabolomics - The Combination of Analytical Biochemistry, Biology, and Informatics, Roessner, U., Nahid, A., Chapman, B., Hunter, A., Bellgard, M., 2011 Comprehensive Biotechnology, Second Edition
Classification of information about proteins, Sidhu, A.S., Bellgard, M.I., Dillon, T.S., 2007 Bioinformatics: Tools and Applications
A comparative analysis of mammalian genomics: Prokaryote and eukaryote perspectives, Bellgard, M.I., Gojobori, T. 2004 Mammalian Genomics
Bioinformatics: From computational analysis through to integrated systems, Bellgard, M.I.2004 Mammalian Genomics

Editorial

Editorial: Precision Public Health - Weeramanthri, T.S. , Dawkins, H.J.S. , Baynam, G. , ... Gudes, O. , Semmens, J.B. Frontiers in Public Health, 2018, 6, 121

Conference papers

A Registry Framework Enabling Patient-Centred Care, Bellgard, M.I., Napier, K., Render, L., Radochonski, M., Lamont, L., Graham, C., Wilton, S.D., Fletcher, S., Goldblatt, J., Hunter, A.A., Weeramanthri, T., 2015 Studies in Health Technology and Informatics
An open framework for extensible multi-stage bioinformatics software, Keeble-Gagnère, G., Nyström-Persson, J., Bellgard, M.I., Mizuguchi, K., 2012 Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)
RS-YABI: A workflow system for Remote Sensing Processing in AusCover, Wang, Z., King, E., Smith, G., Bellgard, M., Broomhall, M., Chedzey, H., Fearns, P., Garcia, R., Hunter, A., Lynch, M., Shibeci, D., 2011 MODSIM 2011 - 19th International Congress on Modelling and Simulation - Sustaining Our Future: Understanding and Living with Uncertainty
Identification of genes involved with tick infestation in Bos taurus and Bos indicus, Kongsuwan, K., Piper, E.K., Bagnall, N.H., Ryan, K., Moolhuijzen, P., Bellgard, M., Lew, A., Jackson, L., Jonsson, N.N., 2008 Developments in Biologicals
A bioinformatics reference model: Towards a framework for developing and organising bioinformatic resources, Hiew, H.L., Bellgard, M., 2007 AIP Conference Proceedings.
Wheat genome structure and function: Genome sequence data and the International Wheat Genome Sequencing Consortium. Moolhuijzen, P., Dunn, D.S., Bellgard, M., Carter, M., Jia, J., Kong, X., Gill, B.S., Feuillet, C., Breen, J., Appels, R., 2007 Australian Journal of Agricultural Research
Multidotter: Dot-matrix program for multiple sequences, Nozaki, Y., Macgregor, A., Smith, C., Hunter, A., Bellgard, M., 2005 Proceedings of the 2005 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'05
Comparative genomic analysis of non-coding sequences and the application of RNA interference tools for bovine functional genomics, Lew, A.E., Jackson, L.A., Bellgard, M.I., 2005 Australian Journal of Experimental Agriculture
GRID-enabled bioinformatics applications for comparative genomic analysis at the CBBC, Hunter, A., Schibeci, D., Hiew, H.L., Bellgard, M. 2004 Proceedings - IEEE International Conference on Cluster Computing, ICCC
Data representation influences protein secondary structure prediction using artificial neural networks, Lamont, O., Liang, H.H., Bellgard, M. 2001 ANZIIS 2001 - Proceedings of the 7th Australian and New Zealand Intelligent Information Systems Conference
Why a window-based learning algorithm using an Effective Boltzmann machine is superior to the original BM learning algorithm, Bellgard, M.I., Taplin, R.H. 1999 ICONIP 1999, 6th International Conference on Neural Information Processing - Proceedings
ORBIT: An integrated environment for user-customized bioinformatics tools, Bellgard, M.I., Hiew, H.L., Hunter, A., Wiebrands, M. 1999 Bioinformatics
Dynamic evolution of genomes and the concept of genome space, Bellgard, M.I., Itoh, T., Watanabe, H., Imanishi, T., Gojobori, T., 1999 Annals of the New York Academy of Sciences.
Using the Hopfield model with mean field annealing to solve the routing problem in packet-switched communication networks, Dixon, Michael W., Cole, Graeme R., Bellgard, Matthew I., 1995 Proceedings of the IEEE International Conference on Systems, Man and Cybernetics
Using the Hopfield neural network with mean field annealing to solve the shortest path problem in a communication network, Dixon, Michael W., Cole, Graeme R., Bellgard, Matthew I.,1995 IEEE International Conference on Neural Networks - Conference Proceedings
Using an effective Boltzmann machine to learn context dependencies of a sequence, Bellgard, Matthew I., Tsang, Chi-Ping, 1995 IEEE International Conference on Neural Networks - Conference Proceedings
Neural network shortest path algorithm for routing in packet-switched communication networks, Dixon, Michael W., Cole, Graeme R., Bellgard, Matthew I., 1995 IEEE International Conference on Communications
Some experiments on the use of genetic algorithms in a Boltzmann machine, Bellgard, Matthew I., Tsang, Chi Ping, 1991

Data papers

Shoot transcriptome of the giant reed, Arundo donax, Barrero, R.A., Guerrero, F.D., Moolhuijzen, P., Goolsby, J.A., Tidwell, J., Bellgard, S.E., Bellgard, M.I., 2015 Data in Brief

Notes

Role of international registries in enhancing the care of familial hypercholesterolaemia, Hammond, E., Watts, G.F., Rubinstein, Y., Farid, W., Livingston, M., Knowles, J.W., Lochmüller, H., Bellgard, M., Dawkins, H.J. 2013 International Journal of Evidence-Based Healthcare.
A modular approach to disease registry design: Successful adoption of an internet-based rare disease registry, Bellgard, M.I., Macgregor, A., Janon, F., Harvey, A., O'Leary, P., Hunter, A., Dawkins, H. 2012 Human Mutation

Erratum

Correction to Dispelling myths about rare disease registry system development [Source Code Biol Med, 8, (2013), 21] 10.1186/1751-0473-8-21, 24131574, Bellgard, M., Beroud, C., Parkinson, K., Harris, T., Ayme, S., Baynam, G., Weeramanthri, T., Dawkins, H., Hunter, A., 2014 Source Code for Biology and Medicine.
Erratum: LegumeDB bioinformatics resource: Comparative genomic analysis and novel cross genera marker identification in lupin and pasture legume species (Genome 49, (689-699)), Moolhuijzen, P., Cakir, M., Hunter, A., Schibeci, D., Macgregor, A., Smith, C., Francki, M., Jones, M.G.K., Appels, R., Bellgard, M., 2006 Genome
Erratum: The evolution of MHC diversity by segmental duplication and transposition of retroelements (J. Molecular Evolution (1997) 45:6 (599- 609)), Kulski, J.K., Gaudieri, S., Bellgard, M., Balmer, L., Giles, K., Inoko, H., Dawkins, R.L. 1998 Journal of Molecular Evolution

Publications

The last four years of publications can be viewed below.

Full publications list

Visit the research repository to view a full list of publications

Research repository

Bellgard, M., Bennett, R., Wyborn, Y., Williams, C., Barner, L. and Zeps, N. (2023)
RDM+PM Checklist: Towards a Measure of Your Institution’s Preparedness for the Effective Planning of Research Data Management Data Science Journal. 22 (Art. 36). https://doi.org/10.5334/dsj-2023-036
Article
Zhang, W., Tan, C., Hu, H., Pan, R., Xiao, Y., Ouyang, K., Zhou, G., Jia, Y., Zhang, X-Q., Hill, C. B., Wang, P., Chapman, B., Han, Y., Xu, L., Xu, Y., Angessa, T., Luo, H., Westcott, S., Sharma, D., Nevo, E., Barrero, R. A., Bellgard, M. I., He, T., Tian, X. and Li, C. (2023)
Genome architecture and diverged selection shaping pattern of genomic differentiation in wild barley Plant Biotechnology Journal. 21 (1), pp. 46-62. https://doi.org/10.1111/pbi.13917
Article
Zhou, Z., Tan, C., Chau, M. H. K., Jiang, X., Ke, Z., Chen, X., Cao, Y., Kwok, Y. K., Bellgard, M., Leung, T. Y., Choy, K. W. and Dong, Z. (2023)
TEDD: a database of temporal gene expression patterns during multiple developmental periods in human and model organisms Nucleic Acids Research. 51 (D1), pp. D1168-D1178. https://doi.org/10.1093/nar/gkac978
Article
Mu, A., Klare, W. P., Baines, S. L., Ignatius Pang, C. N., Guérillot, R., Harbison-Price, N., Keller, N., Wilksch, J., Nhu, N. T. K., Phan, M-D., Keller, B., Nijagal, B., Tull, D., Dayalan, S., Chua, H. H. C., Skoneczny, D., Koval, J., Hachani, A., Shah, A. D., Neha, N., Jadhav, S., Partridge, S. R., Cork, A. J., Peters, K., Bertolla, O., Brouwer, S., Hancock, S. J., Álvarez-Fraga, L., De Oliveira, D. M. P., Forde, B., Dale, A., Mujchariyakul, W., Walsh, C. J., Monk, I., Fitzgerald, A., Lum, M., Correa-Ospina, C., Roy Chowdhury, P., Parton, R. G., De Voss, J., Beckett, J., Monty, F., McKinnon, J., Song, X., Stephen, J. R., Everest, M., Bellgard, M. I., Tinning, M., Leeming, M., Hocking, D., Jebeli, L., Wang, N., Ben Zakour, N., Yasar, S. A., Vecchiarelli, S., Russell, T., Zaw, T., Chen, T., Teng, D., Kassir, Z., Lithgow, T., Jenney, A., Cole, J. N., Nizet, V., Sorrell, T. C., Peleg, A.Y., Paterson, D. L., Beatson, S. A., Wu, J., Molloy, M. P., Syme, A. E., Goode, R. J. A., Hunter, A. A., Bowland, G., West, N. P., Wilkins, M. R., Djordjevic, S. P., Davies, M. R., Seemann, T., Howden, B. P., Pascovici, D., Tyagi, S., Schittenhelm, R. B., De Souza, D. P., McConville, M. J., Iredell, J. R., Cordwell, S. J., Strugnell, R. A., Stinear, T. P., Schembri, M. A. and Walker, M. J. (2023)
Integrative omics identifies conserved and pathogen-specific responses of sepsis-causing bacteria Nature Communications. 14 (Art. 1530). https://doi.org/10.1038/s41467-023-37200-w
Article

Leader, G., Whelan, S., Chonaill, N. N., Coyne, R., Tones, M., Heussler, H., Bellgard, M. and Mannion, A. (2022)
Association between early and current gastro-intestinal symptoms and co-morbidities in children and adolescents with Angelman syndrome Journal of Intellectual Disability Research. 66 (11), pp. 865-879. https://doi.org/10.1111/jir.12975
Article
Roche, L., Tones, M., Cross, M., Bellgard, M. and Heussler, H. (2022)
An Overview of the Adaptive Behaviour Profile in Young Children with Angelman Syndrome: Insights from the Global Angelman Syndrome Registry Advances in Neurodevelopmental Disorders. 6 (4), pp. 442-455. https://doi.org/10.1007/s41252-022-00278-2
Article

Rodriguez-Valle, M., McAlister, S., Moolhuijzen, P. M., Booth, M., Agnew, K., Ellenberger, C., Knowles, A. G., Vanhoff, K., Bellgard, M. I and Tabor, A. E. (2021)
Immunomic Investigation of Holocyclotoxins to Produce the First Protective Anti-Venom Vaccine Against the Australian Paralysis Tick, Ixodes holocyclus Frontiers in Immunology. 12 (Art. 744795). https://doi.org/10.3389/fimmu.2021.744795
Article

Tan, C., Chapman, B., Wang, P., Zhang, Q., Zhou, G., Zhang, X-Q., Barrero, R. A., Bellgard, M. I. and Li, C. (2020)
BarleyVarDB: a database of barley genomic variation Database. (Art. baaa091). https://doi.org/10.1093/database/baaa091
Article
Bellgard, M. I. (2020)
ERDMAS: An exemplar-driven institutional research data management and analysis strategy International Journal of Information Management. 50, pp. 337-340. https://doi.org/10.1016/j.ijinfomgt.2019.08.009
Article
Ramsay, J., Marsh, J., Pedrana, A., Andric, N., Norman, R., Cheng, W., Webb, S., Zeps, N., Bellgard, M., Graves, T., Hellard, M. and Snelling, T. (2020)
A platform in the use of medicines to treat chronic hepatitis C (PLATINUM C) protocol for a prospective treatment registry of real world o BMC Infectious Diseases. 20 (Art. 802). https://doi.org/10.1186/s12879-020-05531-4
Article

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